Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | V | W _ __init__() (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) (sequifier.infer.Inferer method) (sequifier.preprocess.Preprocessor method) (sequifier.train.TransformerModel method) A accumulate_class_counts() (in module sequifier.train) AdEMAMix (class in sequifier.optimizers.ademamix) adjust_and_infer_embedding() (sequifier.infer.Inferer method) adjust_and_infer_generative() (sequifier.infer.Inferer method) apply_inference_column_types() (in module sequifier.infer) apply_inference_tensor_types() (in module sequifier.infer) apply_softmax() (sequifier.train.TransformerModel method) assign_sequence_to_split() (in module sequifier.helpers) B build_args_config() (in module sequifier.sequifier) build_masks() (sequifier.helpers.ModelWindowSamplingPlan method) (sequifier.helpers.ResolvedWindowView method) build_valid_mask() (in module sequifier.helpers) C calculate_item_positions() (in module sequifier.infer) candidate_input_starts (sequifier.helpers.ModelWindowSamplingPlan property) cast_columns_to_string() (in module sequifier.preprocess) cleanup() (in module sequifier.train) combine_maps() (in module sequifier.preprocess) combine_multiprocessing_outputs() (in module sequifier.preprocess) combine_parquet_files() (in module sequifier.preprocess) configure_determinism() (in module sequifier.helpers) configure_logger() (in module sequifier.helpers) configured_model_window_stride() (in module sequifier.helpers) construct_index_maps() (in module sequifier.helpers) create_file_paths_for_multiple_files1() (in module sequifier.preprocess) create_file_paths_for_multiple_files2() (in module sequifier.preprocess) create_file_paths_for_single_file() (in module sequifier.preprocess) create_id_map() (in module sequifier.preprocess) D DatasetMetadata (class in sequifier.config.metadata) decode() (sequifier.train.TransformerModel method) deep_merge_config() (in module sequifier.config.composition) delete_files() (in module sequifier.preprocess) derive_target_column_types() (in module sequifier.helpers) E expand_to_batch_size() (sequifier.infer.Inferer method) extract_inline_metadata() (in module sequifier.config.metadata) extract_sequences() (in module sequifier.preprocess) extract_subsequences() (in module sequifier.preprocess) F fill_number() (in module sequifier.infer) first_eligible_start_indices() (sequifier.helpers.ModelWindowSamplingPlan method) forward() (sequifier.train.TransformerEmbeddingModel method) (sequifier.train.TransformerModel method) forward_embed() (sequifier.train.TransformerModel method) forward_inner() (sequifier.train.TransformerModel method) forward_train() (sequifier.train.TransformerModel method) G gather() (sequifier.helpers.ModelWindowSamplingPlan method) get_batch_limits() (in module sequifier.preprocess) get_best_model_path() (in module sequifier.helpers) get_combined_statistics() (in module sequifier.preprocess) get_embeddings() (in module sequifier.infer) get_embeddings_pt() (in module sequifier.infer) get_group_bounds() (in module sequifier.preprocess) get_last_training_batch_timedelta() (in module sequifier.helpers) get_left_pad_lengths_from_preprocessed_data() (in module sequifier.helpers) get_optimizer_class() (in module sequifier.optimizers.optimizers) get_probs_preds_autoregression() (in module sequifier.infer) get_probs_preds_from_df() (in module sequifier.infer) get_probs_preds_from_dict() (in module sequifier.infer) get_subsequence_starts() (in module sequifier.preprocess) get_torch_dtype() (in module sequifier.helpers) grid_size() (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling method) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) H hyperparameter_search() (in module sequifier.hyperparameter_search) HyperparameterSearchConfig (class in sequifier.config.hyperparameter_search_config) I increase_indent() (sequifier.io.yaml.TrainModelDumper method) infer() (in module sequifier.infer) infer_embedding() (in module sequifier.infer) (sequifier.infer.Inferer method) infer_generative() (in module sequifier.infer) (sequifier.infer.Inferer method) infer_pure() (sequifier.infer.Inferer method) infer_with_embedding_model() (in module sequifier.train) infer_with_generative_model() (in module sequifier.train) infer_worker() (in module sequifier.infer) InferenceConfig (class in sequifier.config.infer_config) Inferer (class in sequifier.infer) InfererModel (in module sequifier.config.infer_config) initialize_optimizer() (sequifier.train.TransformerModel method) insert_top_folder() (in module sequifier.preprocess) invert_normalization() (sequifier.infer.Inferer method) L load_composed_yaml_config() (in module sequifier.config.composition) load_dataset_metadata() (in module sequifier.config.metadata) load_inference_model() (in module sequifier.train) load_onnx_target_decoder_ids() (in module sequifier.infer) load_parquet_folder_dataset() (in module sequifier.infer) load_precomputed_id_maps() (in module sequifier.preprocess) load_pt_dataset() (in module sequifier.infer) load_train_config_with_source() (in module sequifier.config.train_config) LoadedTrainConfig (class in sequifier.config.train_config) M main() (in module sequifier.sequifier) make() (in module sequifier.make) merge_complementary_config_fragments() (in module sequifier.config.composition) merge_config_fragments() (in module sequifier.config.composition) metadata_config_path_from_preprocessing_data_path() (in module sequifier.helpers) metadata_values (sequifier.config.train_config.LoadedTrainConfig property) model (sequifier.config.train_config.LoadedTrainConfig property) model_config (sequifier.config.hyperparameter_search_config.HyperparameterSearchConfig attribute) (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling attribute) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.infer_config.InferenceConfig attribute) (sequifier.config.infer_config.ResolvedInferenceConfig attribute) (sequifier.config.metadata.DatasetMetadata attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.config.train_config.ModelSpecModel attribute) (sequifier.config.train_config.ResolvedSequifierConfig attribute) (sequifier.config.train_config.SequifierConfig attribute) (sequifier.config.train_config.TrainingSpecModel attribute) ModelSpecHyperparameterSampling (class in sequifier.config.hyperparameter_search_config) ModelSpecModel (class in sequifier.config.train_config) ModelWindowSamplingPlan (class in sequifier.helpers) ModelWindowView (class in sequifier.helpers) module sequifier.config.composition sequifier.config.hyperparameter_search_config sequifier.config.infer_config sequifier.config.metadata sequifier.config.preprocess_config sequifier.config.train_config sequifier.helpers sequifier.hyperparameter_search sequifier.infer sequifier.io.sequifier_dataset_from_file sequifier.io.yaml sequifier.make sequifier.optimizers.ademamix sequifier.optimizers.optimizers sequifier.preprocess sequifier.sequifier sequifier.train N normalize() (in module sequifier.infer) normalize_path() (in module sequifier.helpers) numpy_storage_to_pytorch() (in module sequifier.helpers) numpy_to_pytorch() (in module sequifier.helpers) O objective() (in module sequifier.hyperparameter_search) P prepare_inference_batches() (sequifier.infer.Inferer method) preprocess() (in module sequifier.preprocess) preprocess_batch() (in module sequifier.preprocess) Preprocessor (class in sequifier.preprocess) PreprocessorModel (class in sequifier.config.preprocess_config) process_and_write_data_pt() (in module sequifier.preprocess) R read_data() (in module sequifier.helpers) represent_dot_dict() (in module sequifier.io.yaml) represent_numpy_float() (in module sequifier.io.yaml) represent_numpy_int() (in module sequifier.io.yaml) represent_sequifier_object() (in module sequifier.io.yaml) resolve_inference_config() (in module sequifier.config.infer_config) resolve_sequifier_config() (in module sequifier.config.train_config) resolve_unified_polars_numeric_dtype() (in module sequifier.helpers) ResolvedInferenceConfig (class in sequifier.config.infer_config) ResolvedSequifierConfig (class in sequifier.config.train_config) ResolvedWindowView (class in sequifier.helpers) S sample_counts() (sequifier.helpers.ModelWindowSamplingPlan method) sample_trial() (sequifier.config.hyperparameter_search_config.HyperparameterSearchConfig method) (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling method) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) sample_with_cumsum() (in module sequifier.infer) sequifier.config.composition module sequifier.config.hyperparameter_search_config module sequifier.config.infer_config module sequifier.config.metadata module sequifier.config.preprocess_config module sequifier.config.train_config module sequifier.helpers module sequifier.hyperparameter_search module sequifier.infer module sequifier.io.sequifier_dataset_from_file module sequifier.io.yaml module sequifier.make module sequifier.optimizers.ademamix module sequifier.optimizers.optimizers module sequifier.preprocess module sequifier.sequifier module sequifier.train module SequifierConfig (class in sequifier.config.train_config) SequifierDatasetFromFile (class in sequifier.io.sequifier_dataset_from_file) set_epoch() (sequifier.io.sequifier_dataset_from_file.SequifierDatasetFromFile method) set_pdeathsig() (in module sequifier.hyperparameter_search) set_start_batch() (sequifier.io.sequifier_dataset_from_file.SequifierDatasetFromFile method) setup_parser() (in module sequifier.sequifier) source_values (sequifier.config.train_config.LoadedTrainConfig property) step() (sequifier.optimizers.ademamix.AdEMAMix method) StoredWindowLayout (class in sequifier.helpers) subset_to_input_columns() (in module sequifier.helpers) T train() (in module sequifier.train) train_model() (sequifier.train.TransformerModel method) train_worker() (in module sequifier.train) TrainingSpecHyperparameterSampling (class in sequifier.config.hyperparameter_search_config) TrainingSpecModel (class in sequifier.config.train_config) TrainModel (in module sequifier.config.train_config) TrainModelDumper (class in sequifier.io.yaml) TransformerEmbeddingModel (class in sequifier.train) TransformerModel (class in sequifier.train) V validate_grid_n_trials_matches_combinations() (sequifier.config.hyperparameter_search_config.HyperparameterSearchConfig method) validation_model() (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling method) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) verify_variable_order() (in module sequifier.infer) W WindowedInferenceBatch (class in sequifier.infer) WindowSampleIndex (class in sequifier.helpers) write_data() (in module sequifier.helpers)