Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | V | W _ __getitem__() (sequifier.io.sequifier_dataset_from_folder.SequifierDatasetFromFolder method) (sequifier.io.sequifier_dataset_from_folder_lazy.SequifierDatasetFromFolderLazy method) __init__() (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) (sequifier.helpers.LogFile method) (sequifier.hyperparameter_search.HyperparameterSearcher method) (sequifier.infer.Inferer method) (sequifier.io.sequifier_dataset_from_folder.SequifierDatasetFromFolder method) (sequifier.io.sequifier_dataset_from_folder_lazy.SequifierDatasetFromFolderLazy method) (sequifier.preprocess.Preprocessor method) (sequifier.samplers.distributed_grouped_random_sampler.DistributedGroupedRandomSampler method) (sequifier.train.TransformerEmbeddingModel method) (sequifier.train.TransformerModel method) __iter__() (sequifier.io.sequifier_dataset_from_file.SequifierDatasetFromFile method) (sequifier.samplers.distributed_grouped_random_sampler.DistributedGroupedRandomSampler method) __len__() (sequifier.io.sequifier_dataset_from_file.SequifierDatasetFromFile method) (sequifier.io.sequifier_dataset_from_folder_lazy.SequifierDatasetFromFolderLazy method) (sequifier.samplers.distributed_grouped_random_sampler.DistributedGroupedRandomSampler method) __setstate__() (sequifier.optimizers.ademamix.AdEMAMix method) _files (sequifier.helpers.LogFile attribute) _path (sequifier.helpers.LogFile attribute) A accumulation_steps (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) AdEMAMix (class in sequifier.optimizers.ademamix) adjust_and_infer_embedding() (sequifier.infer.Inferer method) adjust_and_infer_generative() (sequifier.infer.Inferer method) apply_softmax() (sequifier.train.TransformerModel method) autoregression (sequifier.config.infer_config.InfererModel attribute) autoregression_extra_steps (sequifier.config.infer_config.InfererModel attribute) B backend (sequifier.config.train_config.TrainingSpecModel attribute) batch_size (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) batches_per_file (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute) build_args_config() (in module sequifier.sequifier) C cast_columns_to_string() (in module sequifier.preprocess) categorical_columns (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) class_share_log_columns (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) class_weights (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) cleanup() (in module sequifier.train) close() (sequifier.helpers.LogFile method) column_types (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) combine_into_single_file (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute) combine_maps() (in module sequifier.preprocess) combine_multiprocessing_outputs() (in module sequifier.preprocess) combine_parquet_files() (in module sequifier.preprocess) construct_index_maps() (in module sequifier.helpers) continue_training (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) create_file_paths_for_multiple_files1() (in module sequifier.preprocess) create_file_paths_for_multiple_files2() (in module sequifier.preprocess) create_file_paths_for_single_file() (in module sequifier.preprocess) create_id_map() (in module sequifier.preprocess) criterion (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) D d_hid (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling attribute) (sequifier.config.train_config.ModelSpecModel attribute) d_model (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling attribute) (sequifier.config.train_config.ModelSpecModel attribute) d_model_by_column (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling attribute) (sequifier.config.train_config.ModelSpecModel attribute) data_name_root (sequifier.preprocess.Preprocessor attribute) data_path (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) ddconfig_path (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) decode() (sequifier.train.TransformerModel method) delete_files() (in module sequifier.preprocess) device (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainingSpecModel attribute) (sequifier.infer.Inferer attribute) device_max_concat_length (sequifier.config.train_config.TrainingSpecModel attribute) distributed (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainingSpecModel attribute) DistributedGroupedRandomSampler (class in sequifier.samplers.distributed_grouped_random_sampler) dropout (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) E early_stopping_epochs (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) epochs (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) expand_data_by_autoregression() (in module sequifier.infer) expand_to_batch_size() (sequifier.infer.Inferer method) export_embedding_model (sequifier.config.train_config.TrainModel attribute) export_generative_model (sequifier.config.train_config.TrainModel attribute) export_onnx (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) export_pt (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) export_with_dropout (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) extract_sequences() (in module sequifier.preprocess) extract_subsequences() (in module sequifier.preprocess) F fill_in_predictions_pl() (in module sequifier.infer) fill_number() (in module sequifier.infer) format_delta() (in module sequifier.infer) format_number() (in module sequifier.train) forward() (sequifier.train.TransformerEmbeddingModel method) (sequifier.train.TransformerModel method) forward_embed() (sequifier.train.TransformerModel method) forward_inner() (sequifier.train.TransformerModel method) forward_train() (sequifier.train.TransformerModel method) G get_batch_limits() (in module sequifier.preprocess) get_combined_statistics() (in module sequifier.preprocess) get_embeddings() (in module sequifier.infer) get_embeddings_pt() (in module sequifier.infer) get_group_bounds() (in module sequifier.preprocess) get_optimizer_class() (in module sequifier.optimizers.optimizers) get_probs_preds() (in module sequifier.infer) get_probs_preds_autoregression() (in module sequifier.infer) get_probs_preds_pt() (in module sequifier.infer) get_subsequence_starts() (in module sequifier.preprocess) grid_sample() (sequifier.config.hyperparameter_search_config.HyperparameterSearch method) (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling method) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) group_proportions (sequifier.config.preprocess_config.PreprocessorModel attribute) H hp_search_name (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) hyperparameter_search() (in module sequifier.hyperparameter_search) (sequifier.hyperparameter_search.HyperparameterSearcher method) HyperparameterSearch (class in sequifier.config.hyperparameter_search_config) HyperparameterSearcher (class in sequifier.hyperparameter_search) I id_maps (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) increase_indent() (sequifier.io.yaml.TrainModelDumper method) index_map (sequifier.infer.Inferer attribute) infer() (in module sequifier.infer) infer_embedding() (in module sequifier.infer) (sequifier.infer.Inferer method) infer_generative() (in module sequifier.infer) (sequifier.infer.Inferer method) infer_pure() (sequifier.infer.Inferer method) infer_with_dropout (sequifier.config.infer_config.InfererModel attribute) infer_with_embedding_model() (in module sequifier.train) infer_with_generative_model() (in module sequifier.train) infer_worker() (in module sequifier.infer) inference_batch_size (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) inference_model (sequifier.infer.Inferer attribute) inference_model_type (sequifier.infer.Inferer attribute) Inferer (class in sequifier.infer) InfererModel (class in sequifier.config.infer_config) insert_top_folder() (in module sequifier.preprocess) invert_normalization() (sequifier.infer.Inferer method) iter_save (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) L levels (sequifier.helpers.LogFile attribute) load_full_data_to_ram (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainingSpecModel attribute) load_inference_model() (in module sequifier.train) load_pt_dataset() (in module sequifier.infer) log_interval (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) LogFile (class in sequifier.helpers) loss_weights (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) lr (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) M main() (in module sequifier.sequifier) make() (in module sequifier.make) map_to_id (sequifier.config.infer_config.InfererModel attribute) (sequifier.infer.Inferer attribute) max_rows (sequifier.config.preprocess_config.PreprocessorModel attribute) model_config_write_path (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) model_hyperparameter_sampling (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) model_name (sequifier.config.train_config.TrainModel attribute) model_path (sequifier.config.infer_config.InfererModel attribute) model_spec (sequifier.config.train_config.TrainModel attribute) model_type (sequifier.config.infer_config.InfererModel attribute) (sequifier.infer.Inferer attribute) ModelSpecHyperparameterSampling (class in sequifier.config.hyperparameter_search_config) ModelSpecModel (class in sequifier.config.train_config) module sequifier.config.hyperparameter_search_config sequifier.config.infer_config sequifier.config.preprocess_config sequifier.config.train_config sequifier.helpers sequifier.hyperparameter_search sequifier.infer sequifier.io.sequifier_dataset_from_file sequifier.io.sequifier_dataset_from_folder sequifier.io.sequifier_dataset_from_folder_lazy sequifier.io.yaml sequifier.make sequifier.optimizers.ademamix sequifier.optimizers.optimizers sequifier.preprocess sequifier.samplers.distributed_grouped_random_sampler sequifier.sequifier sequifier.train N n_classes (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) n_combinations() (sequifier.config.hyperparameter_search_config.HyperparameterSearch method) (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling method) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) n_cores (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute) n_samples (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) nhead (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling attribute) (sequifier.config.train_config.ModelSpecModel attribute) nlayers (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling attribute) (sequifier.config.train_config.ModelSpecModel attribute) normalize() (in module sequifier.infer) normalize_path() (in module sequifier.helpers) num_workers (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainingSpecModel attribute) numpy_to_pytorch() (in module sequifier.helpers) O optimizer (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) ort_session (sequifier.infer.Inferer attribute) output_probabilities (sequifier.config.infer_config.InfererModel attribute) P prepare_inference_batches() (sequifier.infer.Inferer method) preprocess() (in module sequifier.preprocess) preprocess_batch() (in module sequifier.preprocess) Preprocessor (class in sequifier.preprocess) PreprocessorModel (class in sequifier.config.preprocess_config) process_and_write_data_pt() (in module sequifier.preprocess) process_by_file (sequifier.config.preprocess_config.PreprocessorModel attribute) project_path (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.config.train_config.TrainModel attribute) (sequifier.preprocess.Preprocessor attribute) R random_sample() (sequifier.config.hyperparameter_search_config.HyperparameterSearch method) (sequifier.config.hyperparameter_search_config.ModelSpecHyperparameterSampling method) (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling method) rank (sequifier.helpers.LogFile attribute) read_data() (in module sequifier.helpers) read_format (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.config.train_config.TrainModel attribute) real_columns (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) represent_dot_dict() (in module sequifier.io.yaml) represent_numpy_float() (in module sequifier.io.yaml) represent_numpy_int() (in module sequifier.io.yaml) represent_sequifier_object() (in module sequifier.io.yaml) S sample() (sequifier.config.hyperparameter_search_config.HyperparameterSearch method) sample_from_distribution_columns (sequifier.config.infer_config.InfererModel attribute) sample_with_cumsum() (in module sequifier.infer) scheduler (sequifier.config.hyperparameter_search_config.TrainingSpecHyperparameterSampling attribute) (sequifier.config.train_config.TrainingSpecModel attribute) search_strategy (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) seed (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.config.train_config.TrainModel attribute) (sequifier.preprocess.Preprocessor attribute) selected_columns (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.config.train_config.TrainModel attribute) selected_columns_statistics (sequifier.infer.Inferer attribute) seq_length (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.config.train_config.TrainModel attribute) seq_step_sizes (sequifier.config.preprocess_config.PreprocessorModel attribute) sequifier.config.hyperparameter_search_config module sequifier.config.infer_config module sequifier.config.preprocess_config module sequifier.config.train_config module sequifier.helpers module sequifier.hyperparameter_search module sequifier.infer module sequifier.io.sequifier_dataset_from_file module sequifier.io.sequifier_dataset_from_folder module sequifier.io.sequifier_dataset_from_folder_lazy module sequifier.io.yaml module sequifier.make module sequifier.optimizers.ademamix module sequifier.optimizers.optimizers module sequifier.preprocess module sequifier.samplers.distributed_grouped_random_sampler module sequifier.sequifier module sequifier.train module SequifierDatasetFromFile (class in sequifier.io.sequifier_dataset_from_file) SequifierDatasetFromFolder (class in sequifier.io.sequifier_dataset_from_folder) SequifierDatasetFromFolderLazy (class in sequifier.io.sequifier_dataset_from_folder_lazy) set_epoch() (sequifier.io.sequifier_dataset_from_file.SequifierDatasetFromFile method) (sequifier.samplers.distributed_grouped_random_sampler.DistributedGroupedRandomSampler method) setup() (in module sequifier.train) setup_parser() (in module sequifier.sequifier) split_paths (sequifier.preprocess.Preprocessor attribute) step() (sequifier.optimizers.ademamix.AdEMAMix method) subset_to_selected_columns() (in module sequifier.helpers) T target_column_types (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) (sequifier.infer.Inferer attribute) target_columns (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainModel attribute) (sequifier.infer.Inferer attribute) target_dir (sequifier.preprocess.Preprocessor attribute) train() (in module sequifier.train) train_model() (sequifier.train.TransformerModel method) train_worker() (in module sequifier.train) training_config_path (sequifier.config.infer_config.InfererModel attribute) training_data_path (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) training_hyperparameter_sampling (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) training_spec (sequifier.config.train_config.TrainModel attribute) TrainingSpecHyperparameterSampling (class in sequifier.config.hyperparameter_search_config) TrainingSpecModel (class in sequifier.config.train_config) TrainModel (class in sequifier.config.train_config) TrainModelDumper (class in sequifier.io.yaml) TransformerEmbeddingModel (class in sequifier.train) TransformerModel (class in sequifier.train) V validation_data_path (sequifier.config.hyperparameter_search_config.HyperparameterSearch attribute) (sequifier.config.train_config.TrainModel attribute) verify_variable_order() (in module sequifier.infer) W world_size (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.train_config.TrainingSpecModel attribute) write() (sequifier.helpers.LogFile method) write_data() (in module sequifier.helpers) write_format (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute)