Index

_

__init__() (sequifier.helpers.LogFile method) (sequifier.preprocess.Preprocessor method)

__setstate__() (sequifier.optimizers.ademamix.AdEMAMix method) _files (sequifier.helpers.LogFile attribute) _path (sequifier.helpers.LogFile attribute)

A

AdEMAMix (class in sequifier.optimizers.ademamix)

autoregression (sequifier.config.infer_config.InfererModel attribute) autoregression_extra_steps (sequifier.config.infer_config.InfererModel attribute)

B

batches_per_file (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute)

C

cast_columns_to_string() (in module sequifier.preprocess) categorical_columns (sequifier.config.infer_config.InfererModel attribute) column_types (sequifier.config.infer_config.InfererModel attribute) combine_into_single_file (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute) combine_maps() (in module sequifier.preprocess)

combine_multiprocessing_outputs() (in module sequifier.preprocess) combine_parquet_files() (in module sequifier.preprocess) construct_index_maps() (in module sequifier.helpers) create_file_paths_for_multiple_files1() (in module sequifier.preprocess) create_file_paths_for_multiple_files2() (in module sequifier.preprocess) create_file_paths_for_single_file() (in module sequifier.preprocess) create_id_map() (in module sequifier.preprocess)

D

data_name_root (sequifier.preprocess.Preprocessor attribute) data_path (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute)

ddconfig_path (sequifier.config.infer_config.InfererModel attribute) delete_files() (in module sequifier.preprocess) device (sequifier.config.infer_config.InfererModel attribute) distributed (sequifier.config.infer_config.InfererModel attribute)

E

extract_sequences() (in module sequifier.preprocess)

extract_subsequences() (in module sequifier.preprocess)

G

get_batch_limits() (in module sequifier.preprocess) get_combined_statistics() (in module sequifier.preprocess) get_group_bounds() (in module sequifier.preprocess)

get_optimizer_class() (in module sequifier.optimizers.optimizers) get_subsequence_starts() (in module sequifier.preprocess) group_proportions (sequifier.config.preprocess_config.PreprocessorModel attribute)

I

infer_with_dropout (sequifier.config.infer_config.InfererModel attribute) inference_batch_size (sequifier.config.infer_config.InfererModel attribute)

InfererModel (class in sequifier.config.infer_config) insert_top_folder() (in module sequifier.preprocess)

L

levels (sequifier.helpers.LogFile attribute)

load_full_data_to_ram (sequifier.config.infer_config.InfererModel attribute) LogFile (class in sequifier.helpers)

M

make() (in module sequifier.make) map_to_id (sequifier.config.infer_config.InfererModel attribute) max_rows (sequifier.config.preprocess_config.PreprocessorModel attribute) model_config (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) model_path (sequifier.config.infer_config.InfererModel attribute) model_type (sequifier.config.infer_config.InfererModel attribute)

module sequifier.config.infer_config sequifier.config.preprocess_config sequifier.helpers sequifier.make sequifier.optimizers.ademamix sequifier.optimizers.optimizers sequifier.preprocess

N

n_cores (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute)

normalize_path() (in module sequifier.helpers) num_workers (sequifier.config.infer_config.InfererModel attribute) numpy_to_pytorch() (in module sequifier.helpers)

O

output_probabilities (sequifier.config.infer_config.InfererModel attribute)

P

preprocess() (in module sequifier.preprocess) preprocess_batch() (in module sequifier.preprocess) Preprocessor (class in sequifier.preprocess) PreprocessorModel (class in sequifier.config.preprocess_config)

process_and_write_data_pt() (in module sequifier.preprocess) process_by_file (sequifier.config.preprocess_config.PreprocessorModel attribute) project_path (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute)

R

rank (sequifier.helpers.LogFile attribute) read_data() (in module sequifier.helpers)

read_format (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) real_columns (sequifier.config.infer_config.InfererModel attribute)

S

sample_from_distribution_columns (sequifier.config.infer_config.InfererModel attribute) seed (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) (sequifier.preprocess.Preprocessor attribute) selected_columns (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) seq_length (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute) seq_step_sizes (sequifier.config.preprocess_config.PreprocessorModel attribute) sequifier.config.infer_config module sequifier.config.preprocess_config module

sequifier.helpers module sequifier.make module sequifier.optimizers.ademamix module sequifier.optimizers.optimizers module sequifier.preprocess module split_paths (sequifier.preprocess.Preprocessor attribute) step() (sequifier.optimizers.ademamix.AdEMAMix method) subset_to_selected_columns() (in module sequifier.helpers)

T

target_column_types (sequifier.config.infer_config.InfererModel attribute) target_columns (sequifier.config.infer_config.InfererModel attribute)

target_dir (sequifier.preprocess.Preprocessor attribute) training_config_path (sequifier.config.infer_config.InfererModel attribute)

W

world_size (sequifier.config.infer_config.InfererModel attribute) write() (sequifier.helpers.LogFile method)

write_data() (in module sequifier.helpers) write_format (sequifier.config.infer_config.InfererModel attribute) (sequifier.config.preprocess_config.PreprocessorModel attribute)